COVID-19 growth rates vs interventionspost by Bucky · 2020-03-27T21:33:25.851Z · LW · GW · 13 comments
Death growth rates roughly match confirmed case growth rates Growth rates vs interventions Uninhibited growth has a doubling time of 2-3 days Growth with improved hygiene and social distancing has a doubling time of 3-5 days Growth of virus with partial lockdown has doubling time >4 days Growth with virus under control has halving time as low as 2-5 days Country summaries China Italy USA Spain, Germany, France, Switzerland, UK Iran South Korea Japan Summary None 13 comments
It’s been a couple of weeks since I posted [LW · GW] regarding the growth rates of COVID-19 cases in various countries. Now, after these countries have implemented various control measures it is more clear how each measure effects growth rate. This post looks at the 10 countries with the highest number of confirmed cases.
Death growth rates roughly match confirmed case growth rates
Firstly, to check whether the confirmed case growth rates roughly reflect the actual growth rates, they can be compared to death rates (suggested in a comment [LW(p) · GW(p)] by Unnamed on my previous post). This doesn’t show what the ratio is between the number of cases and the number of detected cases, it only shows whether the fractional growth per day in detected cases roughly represents the actual growth rate of the virus.
Obviously the death growth rate doesn’t perfectly indicate the spread of the virus but it has different biases so if the two are similar then they probably at least somewhat reflect the actual growth rate.
A graph to compare growth rates of confirmed cases & deaths of the 10 worst affected countries is here. (Select country at the top)
(Note: For the y-axis I have used doubling time of infectious cases, which I’ve defined as 10 days fairly arbitrarily. The actual length of time doesn’t matter too much to the results but it’s important to have some limit otherwise the recent China and South Korea results particularly make less sense. This makes the definition of doubling time for deaths a bit odd but it's good enough for the purposes of comparing the rates.)
Generally the rates match well. Iran and USA are the main ones where there is significant divergence (and both look more reasonable recently), the others all seem sensible.
In theory there should be a lag between cases and deaths which we seem to see in Italy and Spain but the data is too noisy to say for sure.
Growth rates vs interventions
I’ve created 4 different displays of the cases data:
1. Cumulative confirmed cases
2. New cases per day
3. Doubling time for infectious cases
4. Fractional change in infectious cases per day
This last one is analagous to the effective reproduction number () and could be converted to that if I knew the mean infectious period. I could take a stab at this but I think it's best to leave it as it is. It's useful to know that 1 on this axis is the same as , even if there would need to be a scaling factor for the other points to convert them to .
I’ve annotated the graphs with what anti-COVID actions each country has taken and when. Apologies for anywhere I’ve got these wrong, if you see any massive errors for your country I’ll try to update.
Apologies also for the overlapping writing - mouse over the relevant points if it gets confusing and click the legend to toggle countries. Double-click to toggle between only that country or all countries.
There has been some form of lockdown for most countries but the exact extent differs between countries. I haven't attempted to distinguish between them.
There is expected to be a ~5 day delay between actions taken and effects being seen in the confirmed cases statistics as people are usually tested when they are symptomatic.
Uninhibited growth has a doubling time of 2-3 days
Refer to my previous post. I don’t really have much to add here, only that my initial calculations of doubling time had a small error so the doubling times are actually slightly lo (i.e. growth faster) than I initially reported.
Growth with improved hygiene and social distancing has a doubling time of 3-5 days
I also mentioned in that post that it seemed as though the doubling time for each country was increasing over time. This seems to me to represent additional simple precautions starting to be taken - such as improved hygiene and social distancing (short of a lockdown).
4-5 days is probably the best that can be achieved by these methods. Many countries have put these in place but none have been able to slow the spread of the virus sufficiently without taking additional actions.
Growth of virus with partial lockdown has doubling time >4 days
Different countries have enacted different strictness levels in their lockdowns. These haven't been in place long enough to know exactly what's happening but they have had an effect and in Italy's case especially this has started to strongly increase doubling times.
Growth with virus under control has halving time as low as 2-5 days
The indication of having (i.e. active cases decreasing) is that the doubling time becomes negative (and represents a halving time). This is probably seen better in the daily growth factor graph where a value <1 indicates shrinkage.
We have 2 examples of countries which have had significant outbreaks and brought them under control – China and South Korea. In both cases the doubling time starts climbing and keeps going until the active cases starts to decrease. Under full control the halving time of active cases was 2-5 days.
We don’t currently have any countries with a large number of cases where the doubling time is >6 days and holds steady for a prolonged period. The possible exception is Iran but I have less confidence in the data there due to the mismatch between growth rate of confirmed cases and deaths and in the last few days it looks like the growth rate is increasing again.
I suspect that having a sustained high doubling time is possible if is just above 1 but so far either a country is not doing enough (doubling time of 2-5 days) or they are doing enough and the cases are about to start decreasing. If is large to start with it’s hard to find that perfect amount of intervention which takes to 1 so that the number of new cases stay manageable. Possibly as China and South Korea loosen their restrictions they are starting to find that point.
The above is based on looking at the performances of various countries as described below.
China successfully applied a quarantine in Wuhan which reduced a rapidly growing epidemic to a handful of new cases per day. This quarantine was very strict compared to other countries on this list and the halving rate was 2-5 days. Other, less strict quarantines are likely to shrink more slowly.
More recently (11th March), the restrictions in Wuhan were eased to allow citizens to go back to work. Since 18th March the virus has started growing again, so far averaging a doubling rate of 7 days or so. So far they are performing the dance successfully.
This seems to me the most likely next stage for Western countries. Exactly what rate the virus is managed to before it needs to be suppressed again is unclear. China at the moment should have plenty of tests and protective equipment so whatever they achieve is likely to be fairly close to the best possible scenario. Successful contact tracing could allow it to pause indefinitely without a full lockdown.
Doubling times have been increasing as the government has implemented additional control measures.
Lombardy (main outbreak in Italy) was locked down fairly early on. This increased the doubling time to 3-4 days. Later lockdowns which eventually covered the entire country increased this further such that the number of new cases per day appears to be levelling off. Most recently the Lombardy lockdown was tightened to decrease spread rate further. I don’t think it will be long before the number of live cases starts to decrease.
The growth rate in the USA shows the least evidence of slowing down. The growth rate in deaths is less so there may be something confounding the data on confirmed cases, such as increasing coverage of testing.
Many states, including the main centres appear to have implemented lockdowns in recent days so these should start having an effect shortly. Some counties in the Bay area implemented a lockdown earlier but John Hopkins have started aggregating by state and any effects haven’t shown up in the California figures yet.
Spain, Germany, France, Switzerland, UK
These have all followed fairly similar paths. Schools have closed between 2k and 5k cases (Switzerland ~1k). Lockdowns have happened between 5k and 10k cases.
Some countries seem very keen to say there is no lockdown (e.g. Germany, Switzerland) and their actions are correspondingly less strict. However they do entail a large curtailment of freedoms even if they are less strictly enforced.
France seems to have been most strict with their measures in enacting fines for violators although I don’t know how effective these are.
The UK and Switzerland are a bit behind the other countries in terms of cases but their actions have similarly lagged so haven't taken advantage of their initial advantage.
Iran is a strange one in that their total number of new cases per day has been fairly flat for a couple of weeks. I’m not sure whether they have achieved a perfect or whether their data is a bit funny – their deaths data don’t really reflect their confirmed cases although more recently they start to match more closely.
South Korea are my favourite COVID-19 dealing country.
They essentially had it under control until the infamous patient 31 infected a large number in his church who then went on to infect more until there were >5k cases associated with the church (more than half of the total number of cases in the country).
Despite the government never imposing any particularly strict orders, the entire city of Daegu was deserted within a couple of days of the patient 31 outbreak being confirmed. Between that and the intensive contact tracing and testing program the outbreak was quickly brought under control so that the hospitals weren’t overrun and the fatality rate was kept down to 1.3%.
In 2015 South Korea experienced the second worst outbreak of MERS. There were 168 confirmed infections and 38 people died. This article has an interesting summary of how the lessons from that outbreak fed into the COVID-19 response.
The halving time during the reduction phase was 3-5 days.
Arguably they have now entered their dance phase as .
I haven’t included Japan on the graphs as nothing much has happened there which is pretty amazing. Japan is probably what South Korea would look like if there had been no patient 31.
They have taken precautions similar to Western countries before the latter implemented stricter lockdown. However they have managed to contain every cluster of cases before any have got out of control.
There has been a lot of talk about Japan not doing enough testing and that their numbers are artificially suppressed. My prior for this is pretty low – this seems like an unlikely thing for a government to do, especially as it wouldn’t take long before the truth came out as the death toll rose.
As for evidence against that hypothesis, Japan have done a lot of testing compared to the number of cases - 19 out of 20 tests come back negative (even if the absolute numbers are low). If they are deliberately suppressing their numbers then they’re doing a really good job at testing the wrong people.
Japan’s cases started to get serious in mid-Feb. I think it’s clear that they managed to avoid any out of control outbreaks until at least the beginning of March, otherwise there would be so many cases by now that it would be obvious. If they can keep the virus in control for 3 weeks then they can probably keep it in control for a couple more up until now. If a cluster does get out of control in Japan then I expect it to go the same way as South Korea.
Of course the Japanese government could be lying about everything but again if they are I would expect better evidence from citizens/journalists by now.
Unmitigated spread: 2-3 days
Improved hygiene and basic social distancing: 3-5 days
Lockdown with work allowed: 5+ days (possibly cases decreasing)
Halving times (single sample each)
Full lockdown: 2-5 days
Flexible lockdown + Epic contact tracing: 3-5 days
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